Bioconductor R update

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bioconductor biocgenerics ubuntu package updates r update

7.3 years ago siinemselvi • 0

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clusterprofiler package installation r update

updated 7.8 years ago by tjiagoM ▴ 10 • written 7.8 years ago by klv2706w ▴ 10

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r update upgrade bioclite

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by Lna • 0

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r update

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by filip.roudnicky • 0

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biocinstaller r update

9.9 years ago • updated 9.8 years ago meeta.mistry ▴ 30

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upgrade r update

updated 9.9 years ago by Dan Tenenbaum ★ 8.2k • written 9.9 years ago by daniil.sarkisyan ▴ 10

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R update

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by AJC ▴ 10

7 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

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Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

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